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Abstract Orientations of active antithetic faults can provide useful constraints on in situ strength of the seismogenic crust. We use LINSCAN, a new unsupervised learning algorithm for identifying quasi‐linear clusters of earthquakes, to map small‐scale strike‐slip faults in the Anza‐Borrego shear zone, Southern California. We identify 332 right‐ and left‐lateral faults having lengths between 0.1 and 3 km. The dihedral angles between all possible pairs of conjugate faults are nearly normally distributed around 70°, with a standard deviation of ∼30°. The observed dihedral angles are larger than those expected assuming optimal fault orientations and the coefficient of friction of 0.6–0.8, but similar to the distribution previously reported for the Ridgecrest area in the Eastern California Shear Zone. We show that the observed fault orientations can be explained by fault rotation away from the principal shortening axis due to a cumulated tectonic strain.